bio2rdf-mashup
It is a subset of the Bio2RDF dataset (Release 3), compiled by Michel Dumontier. This dataset includes HGNC, GO, Taxonomy, KEGG, OMIM, SIDER, and DrugBank.
| Maintainer | jdkim@dbcls.rois.ac.jp |
|---|---|
| Project Home | |
| Public? | Yes |
| Endpoint URL | http://bio2rdf-mirror.dbcls.jp/sparql |
| Graph URI | |
| Dictionary URL | http://pubdictionaries.org/find_ids.json?dictionary=GO-Bio2RDF-r3,Taxonomy-Bio2RDF-r3,HGNC-Bio2RDF-r3,OMIM-Bio2RDF-r3,KEGG-Bio2RDF-r3,DrugBank-Bio2RDF-r3,SIDER-Bio2RDF-r3&threshold=0.45 |
| Predicate Dictionary URL | |
| Max hop | 3 |
| Ignore predicates |
http://rdfs.org/ns/void#inDataset http://bio2rdf.org/omim_vocabulary:refers-to http://bio2rdf.org/omim_vocabulary:article http://bio2rdf.org/omim_vocabulary:mapping-method |
| Sortal predicates |
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#subClassOf |
| Sample queries |
Which genes are involved in calcium binding? What drugs can be used to treat pain? Which pathways involve genes that are the targets of drugs that treat pain? Which genes are involved in pain diseases? Which drug targets are linked to mental disease? |