bio2rdf-mashup

It is a subset of the Bio2RDF dataset (Release 3), compiled by Michel Dumontier. This dataset includes HGNC, GO, Taxonomy, KEGG, OMIM, SIDER, and DrugBank.

Maintainer jdkim@dbcls.rois.ac.jp
Project Home http://bio2rdf.org/
Public? Yes
Endpoint URL http://bio2rdf.org/sparql
Graph URI
Dictionary URL http://pubdictionaries.org/find_ids.json?dictionary=GO-Bio2RDF-r3,Taxonomy-Bio2RDF-r3,HGNC-Bio2RDF-r3,OMIM-Bio2RDF-r3,KEGG-Bio2RDF-r3,DrugBank-Bio2RDF-r3,SIDER-Bio2RDF-r3&threshold=0.45
Predicate Dictionary URL
Max hop 3
Ignore predicates
http://rdfs.org/ns/void#inDataset
http://bio2rdf.org/omim_vocabulary:refers-to
http://bio2rdf.org/omim_vocabulary:article
http://bio2rdf.org/omim_vocabulary:mapping-method
Sortal predicates
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/2000/01/rdf-schema#subClassOf
Sample queries
Which genes are involved in calcium binding?
What drugs can be used to treat pain?
Which pathways involve genes that are the targets of drugs that treat pain?
Which genes are involved in pain diseases?
Which drug targets are linked to mental disease?
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